What is the difference between complement system and interferon




















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Functional activity of natural antibody is altered in Cr2-deficient mice. Essentially all upregulated genes and pathways returned to baseline expression levels at resolution of TA-TMA after eculizumab therapy, supporting the clinical practice of discontinuing complement blockade after resolution of TA-TMA.

In summary, we observed activation of multiple complement pathways in TA-TMA, in contrast to atypical hemolytic uremic syndrome aHUS , where complement activation occurs largely via the alternative pathway.

Our data also suggest a key relationship between increased interferon signaling, complement activation, and TA-TMA. These findings open opportunities to study novel complement blockers and combined anti-complement and anti-interferon therapies in patients with TA-TMA and other microangiopathies like aHUS and lupus-associated TMAs.

Here, we present novel evidence using gene expression analysis of complement activation via all complement pathways-alternative, classical, and lectin. Our data indicate important roles for activation of both complement and interferon pathways in patients with TA-TMA and offer potential new therapeutic targets for TA-TMA and other disorders presenting with thrombotic microangiopathies, especially in patients with lack of response to eculizumab therapy.

Patients are consented before transplant, prospectively enrolled, and blood samples are collected and stored starting before transplant and continuing weekly until day after HSCT. Cases and time-matched controls had available peripheral blood mononuclear cells PBMCs samples stored within 1 week before transplant conditioning chemotherapy baseline , at the time of TA-TMA diagnosis, and when eculizumab was discontinued or equivalent timepoints in controls supplemental Figure 1.

Patient demographics and disease characteristics were captured from the clinical database. A baseline sample was not used because it represents recipient PBMCs.

To accurately quantify the library concentration for the clustering, the library was diluted in dilution buffer 10 mM Tris-HCl, pH 8. Individually indexed libraries were proportionally pooled million reads per sample for clustering in the cBot system Illumina, San Diego, CA. Libraries at the final concentration of Sequence reads were aligned to the human reference genome hg19 using the TopHat2 aligner 16 and reads aligning to each known transcript were counted using Bioconductor packages for NGS data analysis.

Statistical significance of differential expressions was established for false discovery rate FDR —adjusted P values. The gene list enrichment analysis was performed in 2 steps.

A stringent Bonferroni adjustment was used for P value adjustment in this analysis. Second, the Random Set 25 enrichment analysis, as implemented in the CLEAN package, 26 of upregulated genes against all MSigDB gene sets 27 was performed to identify additional complement and interferon-related categories. Standard FDR P value adjustment was also used in this analysis. We selected 7 autologous HSCT recipients range, years old with neuroblastoma who all received identical high-dose chemotherapy conditioning with carboplatin, etoposide, and melphalan, a regimen reported to be associated with a high-risk of TA-TMA and had stored samples available for this study.

All 4 cases were treated with eculizumab and received 7 to 19 doses, after which they all had resolution of TA-TMA and normalization of their blood sC5b-9 concentration and recovery of organ function.

Eculizumab was successfully discontinued in all treated cases without any evidence of TA-TMA recurrence. All 4 cases were alive and well at 1 year after transplant.

Demographics and disease characteristics are summarized in supplemental Table 2. Demographics and relevant disease characteristic are listed in supplemental Table 3.

An enrichment analysis of KEGG pathways, 21 transcription factor targets, 22,23 and MSigDB hallmark gene sets 24 identified significant activation of complement, complement-related genes, and interferon-responsive genes Table 1. The involvement of differentially expressed genes in upregulated complement and interferon-related pathways, including signal transducer and activator of transcription 1 and 2 STAT1 and STAT2 targets, is illustrated in supplemental Figure 2. The comprehensive analysis of MSigDB identified additional complement and interferon-related gene sets enriched for upregulated genes Table 2.

Upregulated pathways and transcription factor targets at the time of TA-TMA diagnosis as compared with pretransplant baseline. Focused analysis of gene expression levels of complement and interferon-related genes showed significant changes in expression of 76 complement and interferon-related genes Figure 1. The genes that were still upregulated after resolution of TA-TMA were related to proliferation, and increased expression is likely appropriate during stem cell engraftment and blood count recovery.

The figure shows a section of the heatmap that illustrates the change in complement and interferon gene expression profiles in patients with TA-TMA. Pathway analyses confirmed significant upregulation of multiple complement pathways, including upregulation of the alternative, classical, and lectin pathways at TA-TMA diagnosis as compared with pretransplant baseline.

No complement pathways were downregulated. Specifically, the data showed a marked upregulation of expression of the complement component C1Q C chain Upregulation of C2 elevated 2.

Factor D was also upregulated 1. Additional changes in expression of key genes in the alternative, classical, and lectin pathways of complement activation are displayed in Figure 2.

This figure illustrates gene expression in alternative, classical, and lectin complement pathways among cases with TA-TMA at the time of clinical diagnosis but before initiation of complement-blocking therapy with eculizumab. Red letters and red outlines indicate statistically significant changes in gene expression from pretransplant baseline to the time of TA-TMA clinical diagnosis.

Because of our interest in identifying new targetable endothelial injury pathways, we investigated if interferon activation was associated with TA-TMA, or just with the transplantation process itself, by comparing gene expression profiles at TA-TMA diagnosis and resolution in cases with TA-TMA and at equivalent timepoints in controls without TA-TMA.

Most of the genes in interferon related pathways were not significantly upregulated in controls without TA-TMA at equivalent timepoints posttransplant. Green bars indicate statistically significant differences between time points.

Interferon pathways are not upregulated in controls without TA-TMA at matched time points after transplant. Expression of C2, a key component of the classical pathway, was significantly elevated in cases with TA-TMA, as was CFD, a promoter of rapid activation of complement via the alternative pathway. CFI, a negative regulator of complement, was significantly upregulated more than eightfold in controls without TA-TMA and was nonsignificantly upregulated 3.

We examined only TA-TMA diagnosis and TA-TMA resolution timepoints and not the pretransplant baseline sample in these subjects because in the allogeneic HSCT setting the host genome is present before transplant and the donor genome at the latter 2 timepoints. HSCT is a planned procedure and TA-TMA is frequent in our patient population so biological samples can be collected before, during, and after TA-TMA, allowing mechanistic studies that are impossible with less predictable forms of thrombotic microangiopathies, like atypical hemolytic uremic syndrome aHUS.

The cause of endothelial injury in patients with neuroblastoma and TA-TMA is likely related to high-dose chemotherapy, and we were able to study children receiving exactly the same chemotherapy regimen to eliminate another potential source of heterogeneity.

We considered at length the suitability of PBMC as a source of RNA for this study, rather than liver, traditionally thought to be the major source of complement components. PBMC have the important advantage of being accessible for serial collection, a strategy that would not be possible with liver tissue from human patients.

Enzymes called granzymes are also stored in, and released from, the granules. Granzymes enter target cells through the holes made by perforin.

Once inside the target cell, they initiate a process known as programmed cell death or apoptosis, causing the target cell to die. Another released cytotoxic factor is granulysin , which directly attacks the outer membrane of the target cell, destroying it by lysis. Cytotoxic cells also newly synthesise and release other proteins, called cytokines , after making contact with infected cells.

Cytokines include interferon-g and tumour necrosis factor-a , and transfer a signal from the T cell to the infected, or other neighbouring cells, to enhance the killing mechanisms. Virally infected cells produce and release small proteins called interferons , which play a role in immune protection against viruses.

Interferons prevent replication of viruses, by directly interfering with their ability to replicate within an infected cell. They also act as signalling molecules that allow infected cells to warn nearby cells of a viral presence — this signal makes neighbouring cells increase the numbers of MHC class I molecules upon their surfaces, so that T cells surveying the area can identify and eliminate the viral infection as described above.

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